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Digital Image Processing Lab
This bibliography lists publications by the staff of the Digital Image Processing Lab. Entries appear in reverse chronological order. Some of the entries include links to other on-line information sources (e.g., abstracts, full text, images).
A. Funai, J.A. Fessler, Desmond T.B. Yeo, V.T. Olafsson, D.C. Noll, "Regularized field map estimation in MRI", IEEE Transactions on Medical Imaging, 2008 (to appear).
Desmond T.B. Yeo, C.R. Meyer, J.M. Parent, D.N. Minecan, O. Sagher, K.J. Kluin, B. Kim, "Formulation of Current Density Weighted Indices for Correspondence between fMRI and Electrocortical Stimulation Maps", In: Proceedings of International Society for Magnetic Resonance in Medicine (ISMRM), 16th Scientific Meeting, Toronto, Canada, May 2008 (to appear).
Desmond T.B. Yeo, J.A. Fessler and B. Kim, "Concurrent Correction of Geometric Distortion and Motion Using the Map-Slice-to-Volume Method in Echo-Planar Imaging", Magnetic Resonance Imaging, In Press, 2008.
B. Kim, Desmond T.B. Yeo, R. Bhagalia, "Comprehensive Mathematical Simulation of Functional Magnetic Resonance Imaging Time Series Including Motion-related Image Distortion and Spin Saturation Effect", Magnetic Resonance Imaging, Vol. 26, No. 2, p. 147-159, 2008.
Roshni Bhagalia, Boklye Kim, "Spin Saturation Artifact Correction Using Slice-to-Volume Registration Motion Estimates for fMRI Time Series", Medical Physics, Vol. 35, No. 2, p. 424–434, 2008.
Desmond T.B. Yeo, T.L. Chenevert, J.A. Fessler and B. Kim, "Zero and First-order Phase Shift Correction for Field Map Estimation with Dual-echo GRE Using Bipolar Gradients", Magnetic Resonance Imaging, Vol. 25, No. 9, p. 1263-1271, 2007.
R. Bhagalia, B. Kim, "Effective T1 Based Intensity Compensation of Spin Saturation Effect Due to Out-of-Slice Head Motion in fMRI Time Series Obtained via the MSV Motion Correction Algorithm", In: Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), 15th Scientific Meeting, Berlin, Germany, p. 1861, May 2007.
Desmond T.B. Yeo, R.R. Bhagalia, B. Kim, "Improved Map-Slice-to-Volume Motion Correction with B0 Inhomogeneity Correction: Validation of Activation Detection Algorithms Using ROC Curve Analyses", MICCAI 2006, Lecture Notes in Computer Science, vol. 4191, p. 276-283, 2006.
Meyer, C. R., Moffat, B. A., Kuszpit, K.K., Bland, P.H., McKeever, P.E., Johnson, T.D., Chenevert, T.L., Rehemtulla, A., and Ross, B. D. , "A Methodology for Registration of a Histological Slide and In Vivo MRI Volume Based on Optimizing Mutual Information", J Molecular Imaging, Vol. 5, No. 1, p. 16-23, 2006.
Moffat, B.A., Chenevert, T.L., Meyer, C.R., McKeever, P.E., Hall, D.E., Hoff, B.A., Johnson, T.J., Rehemutulla, A., Ross, B.D., "The Functional Diffusion Map: An Imaging Biomarker for the Early Prediction of Cancer Treatment Outcome", Neoplasia, Vol. 8, No. 4, p. 259-267, 2006.
B. Kim, R. Bhagalia, Desmond T.B. Yeo, "A Realistic fMRI Time Series Simulation with Individual Slice Motion, Geometric Distortion and Spin Saturation Effect", In: Proceedings of International Society for Magnetic Resonance in Medicine (ISMRM), 14th Scientific Meeting, Seattle, Washington, p. 2391, May 2006. (A full-text PDF file is on-line).
Desmond T.B. Yeo, J.A. Fessler, B. Kim, "Concurrent Geometric Distortion Correction in Mapping Slice-To-Volume (MSV) Motion Correction", In: Proceedings of International Society for Magnetic Resonance in Medicine (ISMRM), 14th Scientific Meeting, Seattle, Washington, p. 2342, May 2006. (A full-text PDF file is on-line).
Desmond T.B. Yeo, T.L. Chenevert, J.A. Fessler, B. Kim, "A Robust Field-Map Estimation Method Using Dual-Echo GRE with Bipolar Readout Gradient Structure", In: Proceedings of International Society for Magnetic Resonance in Medicine (ISMRM), 14th Scientific Meeting, Seattle, Washington, p. 2397, May 2006. (A full-text PDF file is on-line).
J.A. Fessler, Desmond T.B. Yeo, D.C. Noll, "Regularized Fieldmap Estimation in MRI", In: Proceedings of IEEE International Symposium of Biomedical Imaging (ISBI), p. 706-709, 2006.
R. Bhagalia, J.A. Fessler, B. Kim, "Gradient Based Image Registration Using Importance Sampling", In: Proceedings of IEEE International Symposium of Biomedical Imaging (ISBI), p. 446-449, 2006.
H. Park, P. H. Bland, A. O. Hero III, and C. R. Meyer, "Least Biased Target Selection in Probabilistic Atlas Construction", MICCAI 2005, Lecture notes in computer sciences, vol. 3750, p.419-426, 2005
R. Narayanan, J. A. Fessler, H. Park, and C. R. Meyer, ""Diffeomorphic Nonlinear Transformations: A local parametric approach for image registration", IPMI 2005, Lecture Notes in Computer Science, vol. 3565, p. 174-185, 2005
H. Park, R. Bhagalia, C. R. Meyer, and B. Kim, "Improved Motion Correction by Joint Mapping of Slices to an Anantomical Volume Demonstrated by Simulated fMRI Time Series", ISMRM 2005.
Desmond T. B. Yeo, Jeffrey A. Fessler, B. Kim, "Motion correction in fMRI by mapping slice-to-volume with concurrent field-inhomogeneity correction", MICCAI 2004, Lecture notes in computer sciences, vol. 3217, p. 752-760, 2004.
H. Park, C. R. Meyer, and B. Kim, "Improved Motion Correction in fMRI by Joint Mapping of Slices into an Anatomical Volume", MICCAI 2004, Lecture notes in computer sciences, vol. 3217, p. 745-751, 2004.
H. Park, P. H. Bland, K. K. Brock, and C. R. Meyer, "Adaptive registration using local information measures", Medical Image Analysis, vol. 8, p. 465-473, 2004.
Thomas, C.T., Meyer, C.R., et al.: "A Positron-Emitting Internal Marker for Identification of Normal Tissue by Positron Emmission Tomography: Phantom Studies and Validation in Patients", Molecular Imaging and Biology, Vol. 5, No. 2, 79-85, 2003 (A full-text PDF file is on-line).
Thomas, C.T., Meyer, C.R., et al.: "Errata: A Positron-Emitting Internal Marker for Identification of Normal Tissue by Positron Emmission Tomography: Phantom Studies and Validation in Patients", Molecular Imaging and Biology, Vol. 5, No. 2, 79-85, 2003 (A full-text PDF file is on-line).
H. Park and C. R. Meyer, "Grid refinement in adaptive non-rigid registration", MICCAI 2003, Lecture notes in computer sciences, vol. 2879, p. 796-803, 2003.
H. Park, Bland, P.H., and Meyer, C.R., "Construction of an Abdominal Probabilistic Atlas and its application in Segmentation", IEEE Transactions on medical imaging, vol. 22, p. 483-492, 2003.
C.R. Meyer, Park, H., and Bland, P.H., "Method for Quantifying Volumetric Lesion Change in Interval Liver CT Examination.", IEEE Transactions on medical imaging, vol. 22, p. 776-781, 2003
H. Park, and C.R. Meyer, "Effects of voxel dimension, anisotropy and data set orientation on data set distribution", International Workshop on growth and motion in 3d medical image, June 1, 2002, Copenhagen.
H. Park, Bland, P.H., and Meyer, C.R., "Methods for quantifying lesion change from interval liver examinations", International Workshop on growth and motion in 3d medical image, June 1, 2002, Copenhagen.
H. Park, and C.R. Meyer, "Information Theory for Locally Adaptive Registrations.", First SIAM Conference on Imaging Science (SIAG/IS) (IS02), March, 2002.
Quint, L.E., P.H. Bland, J.M. Walker, E.A. Kazerooni, F.J. Martinez, M.D. Iannettoni, F.L. Bookstein: Diaphragmatic Shape Change after Lung Volume Reduction Surgery. Accepted for publication in J. Thoracic Imaging, 16(3).
Boes, J.L. and Meyer, C.R.: Multi-variate Mutual Information for Registration. Proceedings of Medical Image Computing and Computer-Assisted Interventions, Cambridge, UK, in Lecture Notes in Computer Science, C. Taylor and A. Colchester, Volume eds. Springer, 1679:606-612, 1999.
Meyer, C.R., J.L. Boes, B. Kim, P.H. Bland: Probabilistic Brain Atlas Construction: Thin-Plate Spline Warping via Maximization of Mutual Information. Proceedings of Medical Image Computing and Computer-Assisted Interventions, Cambridge, UK, in Lecture Notes in Computer Science, C. Taylor and A. Colchester, Volume eds. Springer, 1679:631-637, 1999.
Kim, B., J.L. Boes, P.H. Bland, C.R. Meyer: Out-of-Plane Non-Linear Warping of a Slice into Volume. Proceedings of Medical Image Computing and Computer-Assisted Interventions, Cambridge, UK, in Lecture Notes in Computer Science, C. Taylor and A. Colchester, Volume eds. Springer, 1679:638-645, 1999.
Kim, B., J.L. Boes, P.H. Bland, T.L. Chenevert, C.R. Meyer: Motion Correction in fMRI via Registration of Individual Slices into an Anatomical. Mag. Res. Med., 41(4), 964-972, 1999.
Meyer, C.R., Boes, J.L., Kim, B., Bland, P.H., LeCarpentier, G.L., Fowlkes, J.B., Roubidoux, M.A., Carson, P.L.: Semiautomatic Registration of Volumetric Ultrasound Scans. Ultrasound in Medicine and Biology, 25(3), 339-347, 1999.
Meyer, C.R., J.L. Boes, B. Kim, P.H. Bland, and K.A. Frey: Warping normal patients into the ICBM atlas by maximizing MI. Presented at the International Conference of Functional Mapping of the Human Brain, Montreal, Quebec, 1998.
Kim, B., J.L. Boes, P.H. Bland, T.L. Chenevert, and C.R. Meyer: Slice-based motion correction in fMRI: Mapping each slice into volume. Presented at the International Conference of Functional Mapping of the Human Brain, Montreal, Quebec, 1998.
Meyer, C.R., J.L. Boes, B. Kim, P.H. Bland: Evaluation of Control Point Selection in Automatic Mutual Information Driven, 3D Warping. Proceedings of Medical Image Computing and Computer-Assisted Interventions, Boston, MA in Lecture Notes in Computer Science, W.M. Wells, A. Colchester, and S. Delp, Eds. Springer, 4196:944-951, 1998.
Ross, B.D., Bland, P.H., Garwood, M. and C.R. Meyer: Retrospective correction of surface coil MR images using an automatic segmentation and modeling approach. NMR in Biomedicine, 10: 125-128, 1997.
Kim, B., J.L. Boes, K.A. Frey and C.R. Meyer: Mutual information for automated unwarping of rat brain autoradiographs. NeuroImage 5(1):31-40, 1997. (The abstract is on-line.)
Meyer C.R., J.L. Boes, B. Kim, P.H. Bland, et al.: Demonstration of accuracy and clinical versatility of mutual information for automatic multimodality image fusion using affine and thin plate spline warped geometric deformations. Medical Image Analysis 1(3):195-206, 1997. (A full-text PDF file and five QuickTime movies are on-line.)
Kim, B., Boes, J.L., Bland, P.H., Meyer, C.R.: Effect of Inhomogeneity Correction on Mututal Information Based Image Registration. Presented at the International Society for Magnetic Resonance in Medicine, 5th Scientific Meeting, Vancouver, British Columbia, April 1997.
Kim, B., J. L. Boes, K. A. Frey, C. R. Meyer: Mutual information for automated multimodal image warping. Visualization in Biomedical Computing in Lecture Notes in Computer Science, 1996. 1131: p. 349-354. (The abstract - which includes links to images - is on-line.)
Bland, P.H. and C.R. Meyer: Robust three-dimensional object definition in CT and MRI. Med Phys, 23: 99-107, 1996. (The abstract is on-line.)
Kim, B., J. L. Boes, C. R. Meyer: Coregistration of MR imaging and autoradiography: 2D and 3D thin-plate-spline image warping using points, paths and patches. Presented at the RSNA, Chicago, Illinois, 1995. (The abstract is on-line.)
Boes, J.L., C.R. Meyer, and T.E. Weymouth: Liver definition in CT using a population-based shape model. Proceedings of CVRMed'95, Nice, FR, in Lecture Notes in Computer Science (1995: Springer-Verlag, Berlin) 905:506-512. (The abstract - which includes links to color images - and a full text version with figures (Adobe PDF format) are on-line.)
Boes, J.L., T.E. Weymouth, and C.R. Meyer: Multiple organ definition in CT using a Bayesian approach for 3D model fitting. Proceedings of Vision Geometry IV, San Diego, (1995: SPIE) 2753:1-7. (The abstract is on-line.)
Kim, B., T.L. Chenevert, and B.D. Ross: Growth kinetics and treatment response of the intracerebral rat 9L Brain tumor Model: a quantitative in vivo study using magnetic resonance imaging. Clinical Cancer Research, 1:643-650, 1995.
Kim, B., K.A. Frey, S. Mukhopadhyay, B. Ross, and C.R. Meyer: Co-registration of MRI and autoradiography of rat brain in 3D following automatic reconstruction of 2D data set. Proceedings of CVRMed'95, Nice, FR, in Lecture Notes in Computer Science (1995: Springer-Verlag, Berlin) 905:262-266.
Meyer, C.R., P.H. Bland, and J. Pipe: Retrospective correction of intensity inhomogeneities in MRI and CT. IEEE Transactions on Medical Imaging, 14(1):36-41, 1995. (The abstract - which includes links to images - is on-line.)
Meyer, C.R., P.H. Bland, and J. Pipe: Retrospective correction of MRI amplitude inhomogeneities. Proceedings of CVRMed'95, Nice, FR, in Lecture Notes in Computer Science (1995: Springer-Verlag, Berlin) 905:513-522. (The abstract - which includes links to images - is on-line.)
Meyer, C.R., G.S. Leichtman, J.A. Brunberg, R.L. Wahl, and L.E. Quint: Simultaneous usage of homologous points, lines and planes for optimal, 3D, linear registration of multimodality imaging data. IEEE Transactions on Medical Imaging, 14(1):1-11, 1995. (The abstract is on-line.)
Moskalik, A., P.L. Carson, C.R. Meyer, J.B. Fowlkes, J.M. Rubin, and M.A. Rubidoux: Registration of 3D compound ultrasound scans of the breast for refraction and motion correction. Ultrasound in Medicine and Biology, 21(6):769-778, 1995.
Bland, P.H., C.R. Meyer, and B. Kim: 3D regression-based segmentation: algorithm enhancements and validation of volume estimates. Radiology, 193(P):199, 1994.
Boes, J.L., C.R. Meyer, P.H. Bland, L.E. Quint, F.L. Bookstein, and T.E. Weymouth : Generating a normalized geometric liver model using warping. Investigative Radiology, 29(3):281-286, 1994.
Wahl, R.L., L.E. Quint, R.L. Greenough, C.R. Meyer, R.I. White, and M.B. Orringer: Staging of mediastinal non-small cell lung cancer with FDG PET, CT, and fusion images: preliminary prospective evaluation. Radiology, 191(2):371-377, 1994.
Bland, P.H., S.P. Liou, C.R. Meyer, and R.C. Jain: A new technique for three-dimensional regression-based segmentation in medical image processing. Proceedings of CAR'93, Berlin, in Computer Assisted Radiology (1993: Springer-Verlag) :353-358.
Tincher, M., C.R. Meyer, R. Gupta, and D.M. Williams: Polynomial modeling and reduction of RF body coil spatial inhomogeneity in MRI. IEEE Trans TMI, 12(2):361-365, 1993.
Wahl, R.L., L.E. Quint, R.D. Cieslak, A.M. Aisen, R.A. Koeppe, and C.R. Meyer: "Anatometabolic" tumor imaging: funsion of FDG PET with CT or MRI to localize foci of increased activity. Journal of Nuclear Medicine, 34(7):1190-1197, 1993.
Liu, L., Schunk, B.G. and C.R. Meyer, Optimal contour approximation by deformable piecewise cubic splines. Proceedings of Computer Vision and Pattern Recognition, Vol. 5. (1991, IEEE 91CH2983) 638-643.
Liu, L., B.G. Schunk, and C.R. Meyer: Multi-dimensional robust edge detection. Proceedings of Computer Vision and Pattern Recognition, (1991: IEEE) 91CH2983-5:698-699.